After spending a month in Japan, I fell in love. Here is a list of all my recs. But seriously, if you even had the smallest thought about going, just do it!
Map
Sections
2
Tokyo
Kyoto
Tokyo
Go for the Dutch baby pancakes
SUZU CAFE - Tokyo Station
Think of Time Out Market in major US cities but in Tokyo
Gonpachi Nishi-Azabu
Casual soba spot near nishiazabu (if you're staying in that area)
Soba Tajima
An absolute MUST in the Ginza shopping area. You can take a bento box and go to the rooftop/outdoor area to eat.
Mitsukoshi Ginza
One of the best in Ginza. Intimate, definitely on the pricier side. Make sure to make a rez way ahead (like a week)
Ginza Kojyu
This place set the soba stage for me. Recommend the duck soba (hot).
Sobamae Yamato
Kyoto
Best parfaits in Japan. Japan is known for elaborate dessert but this cafe did it best. Go big or go home.
Karafuneya Coffee
My first experience with conveyor sushi and oh my goodness. This was amazing. You leave in a food coma with high end delicious sushi and only for around $40 pp
Musashi Sushi Sanjo
THE place for kobe beef. I dream about this kobe beef sometimes, it was out of this world.
Pontocho Yakiniku Yamakawa
Good for late night ice cream
Yonayona Ice Cream
One of the best foodie experiences I have had in my life. So much to choose from and the best way to get really japanese street food.
Nishiki Market
This cafe is soo cute, right as you exit Fuhsimi Inari and perfect for a sweet treat. Very worth it and a beautiful and quaint spot.
Inari Saryo
Fire ramen in the central Kyoto area. You order at what looks like a juke box which is a fun experience.